148 packages matching “ncbi”

node-ncbi

v0.8.0 · 8 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Access and parse the NCBI eUtils API in Node or the Browser

76Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.8.0 (the latest release), from the OSV.dev database.

seqparse

v0.2.2 · 4 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Parse sequence files (GenBank, FASTA, SnapGene, SBOL) and accession IDs (NCBI, iGEM) to a common format

6.3KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.2 (the latest release), from the OSV.dev database.

ncbi-database-skill

v1.0.6 · 4 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Comprehensive NCBI Database CLI tool for querying E-utilities API - Gene, PubMed, ClinVar, SRA, BLAST, and more

69Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.6 (the latest release), from the OSV.dev database.

bionode-ncbi

v2.0.1 · 9 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Node.js module for working with the NCBI API (aka e-utils) using Streams.

88Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.0.1 (the latest release), from the OSV.dev database.

ncbi-sequence-retriever

v1.1.2 · 5 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A light weighted tool to retrieve protein or nucleotide sequences based on list of ACCESSION ids from NCBI protein and nuccore database

7Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.1.2 (the latest release), from the OSV.dev database.

ncbi-mcp

v2.1.0 · 10 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Model Context Protocol (MCP) server that integrates NCBI Entrez capabilities.

29Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.1.0 (the latest release), from the OSV.dev database.

jbrowse-plugin-linkout

v0.2.2 · 3 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI linkout

14Downloads across all versions in the last 7 days, from the official npm downloads API.Apache License 2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.2 (the latest release), from the OSV.dev database.

@ncbijs/structure

v0.1.1 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Typed client for NCBI Structure (MMDB/PDB) macromolecular 3D structures

5Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

@ncbijs/http-mcp

v0.1.1 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

MCP server exposing NCBI biomedical tools for LLM agents

17Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

ncbi-design-system

v2.2.0 · 3 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI Design System

7Downloads across all versions in the last 7 days, from the official npm downloads API.ISCLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.2.0 (the latest release), from the OSV.dev database.

ncbi-eutils

v0.3.0 · 9 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI E-utilities API for JavaScript (Node + Browser)

6Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.3.0 (the latest release), from the OSV.dev database.

@ncbijs/protein

v0.1.1 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Typed client for NCBI Protein database (EFetch) with FASTA and GenBank format support

7Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

@pipeworx/mcp-ncbi-eutils

v0.1.0 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI E-utilities — federated Entrez search/fetch (PubMed/Gene/Nucleotide/…)

15Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.0 (the latest release), from the OSV.dev database.

@ncbijs/xml

v0.1.1 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Zero-dependency regex-based XML reader for NCBI document formats

21Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

ncbi-eutil-server

v0.0.4 · 12 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

ncbi-eutils-server with Node

4Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v0.0.4 (the latest release), from the OSV.dev database.

blast-ncbi-tools

v0.10.101 · 7 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI blast+ wrapper for JBlast

9Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.10.101 (the latest release), from the OSV.dev database.

taxlookup

v2.7.0 · 7 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Tax Lookup > NCBI Taxonomy tools

1Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.7.0 (the latest release), from the OSV.dev database.

@ncbijs/eutils

v0.1.1 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Spec-compliant HTTP client for all 9 NCBI E-utilities

14Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

ncbitaxonomy

v1.0.6 · 7 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Tree API for NCBI Taxonomy

9Downloads across all versions in the last 7 days, from the official npm downloads API.ISCLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.6 (the latest release), from the OSV.dev database.

@metaharness/example-bio

v0.2.0 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

MetaHarness example — bioinformatics harness with gene lookup, PubMed literature retrieval, and genomic sequence fetch via NCBI E-utilities and Ensembl REST (npx @metaharness/example-bio my-bot)

17Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.0 (the latest release), from the OSV.dev database.
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