24 packages matching “gff3”

@jbrowse/plugin-gff3

v4.3.0 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 gff3.

2.1KDownloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.3.0 (the latest release), from the OSV.dev database.

@gmod/gff

v2.1.0 · 4 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

read and write GFF3 data as streams

19.5KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.1.0 (the latest release), from the OSV.dev database.

gff-nostream

v5.1.2 · 9 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

utilities to read GFF3 data

2.4KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v5.1.2 (the latest release), from the OSV.dev database.

@jbrowse/text-indexing-core

v4.3.0 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 core text indexing routines for parsing GFF3 and VCF files

159Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.3.0 (the latest release), from the OSV.dev database.

@lipme/vue-iprscan-gff3-svg

v1.0.4 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A Vue 3 component and CLI to display InterProScan GFF3 files as SVG

9Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.4 (the latest release), from the OSV.dev database.

@lipme/ts-biofiledetector

v0.0.20 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A set of function to detect bioinformatics file types (bam, gff3, bed, vcf, tsv, bigwig)

37Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.0.20 (the latest release), from the OSV.dev database.

cgparse

v1.1.2 · 11 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Converts sequence files (GenBank, EMBL, FASTA) and feature files (GFF3, GTF, BED, CSV) to JSON and CGView JSON

4Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.1.2 (the latest release), from the OSV.dev database.

generic-sequence-panel

v2.0.0 · 20 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

read feature and sequence data and produce highlighted fasta

205Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.0.0 (the latest release), from the OSV.dev database.

@lipme/vue-gff3-utils

v0.0.38 · 4 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A set of utils functions and components to get attribute values, links to Dbxref databases, display gene modals, and more.

1Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.0.38 (the latest release), from the OSV.dev database.

@gmod/gtf

v0.0.9 · 2 years ago

90
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

read and write GTF data as streams

292Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.0.9 (the latest release), from the OSV.dev database.

havana-apollo-plugin

v0.0.39 · 5 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Havana plugin for Apollo 3

68Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.0.39 (the latest release), from the OSV.dev database.

g2p_mapper

v2.1.6 · 9 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Map genome to protein coordinates and back

1.5KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.1.6 (the latest release), from the OSV.dev database.

@apollo-annotation/cli

v1.1.1 · 20 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Command line interface for the Apollo annotation server

63Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v1.1.1 (the latest release), from the OSV.dev database.

@lipme/gffcolors

v0.2.5 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A library for handling GFF colors in bioinformatics applications, providing utilities for color management and visualization.

387Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.5 (the latest release), from the OSV.dev database.

react-msaview-cli

v5.6.3 · 5 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Command-line tools for [react-msaview](../) (JBrowseMSA), including batch InterProScan processing for multiple sequence alignments.

317Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v5.6.3 (the latest release), from the OSV.dev database.

@bioscript/seq-format

v0.2.2 · 21 minutes ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Bioinformatics file format converters and parsers (GenBank, EMBL, GFF/GTF, BED, VCF, SAM text)

505Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.2 (the latest release), from the OSV.dev database.

@lipme/gff3lib

v0.0.18 · 1 year ago

95
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

This library is 2 components bundled to view a single gene structure and information it use d3 and vuetify.

43Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v0.0.18 (the latest release), from the OSV.dev database.

@burkov/genoverse

v3.0.1 · 8 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Genoverse is a portable, customizable, back-end independent JavaScript and HTML5 based genome browser which allows the user to explore data in a dynamic and interactive manner.

2Downloads across all versions in the last 7 days, from the official npm downloads API.BSD-3-ClauseLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v3.0.1 (the latest release), from the OSV.dev database.

@lipme/omique-utils-pipeline

v0.1.14 · 1 year ago

95
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A utility pipeline for visualizing and analyzing genomic data, designed for bioinformatics applications.

2Downloads across all versions in the last 7 days, from the official npm downloads API.ISCLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.14 (the latest release), from the OSV.dev database.

biojs-io-gff

v0.1.11 · 10 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A GFF (general feature format) parser

28Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v0.1.11 (the latest release), from the OSV.dev database.
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