This parses emf format from Ensembl alignments

Look up genes, fetch sequences, predict variant consequences, find orthologs, and retrieve cross-database xrefs from Ensembl REST via MCP. STDIO or Streamable HTTP.

CLI for Ensembl VEP and Variant Recoder

rest api for ensembl

Library to retrieve data via the Ensembl REST Api

Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation

Minimal genome browser based on TnT Board and Ensembl data

Model Context Protocol server for Ensembl genomics database

Model Context Protocol server for Ensembl genomics database

Implementation of a VSM-dictionary that uses the EBI search RESTful Web Services to interact with the Ensembl genome database

A client for the Ensembl REST API using the axios requests library.

MyGene.info — gene annotation joining NCBI/Ensembl/UniProt/KEGG/OMIM

Implementation of a VSM-dictionary that uses the EBI search RESTful Web Services to interact with the Ensembl Genomes database (non-vertebrate species)

Transcript Viewer based on TnT board and Ensembl data

MetaHarness example — bioinformatics harness with gene lookup, PubMed literature retrieval, and genomic sequence fetch via NCBI E-utilities and Ensembl REST (npx @metaharness/example-bio my-bot)

Unofficial Node API client for Ensembl's REST API

npm package for ensemble bacteria REST API

Gene orthologs for HiGlass

Open Targets MCP — disease/target/drug knowledge graph.

A TypeScript library for parsing multiple sequence alignment (MSA) files and related formats.