122 packages matching “NCBI”

node-ncbi

v0.8.0 · 8 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Access and parse the NCBI eUtils API in Node or the Browser

76Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.8.0 (the latest release), from the OSV.dev database.

bionode-ncbi

v2.0.1 · 9 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Node.js module for working with the NCBI API (aka e-utils) using Streams.

72Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.0.1 (the latest release), from the OSV.dev database.

ncbi-database-skill

v1.0.6 · 4 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Comprehensive NCBI Database CLI tool for querying E-utilities API - Gene, PubMed, ClinVar, SRA, BLAST, and more

69Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.6 (the latest release), from the OSV.dev database.

seqparse

v0.2.2 · 4 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Parse sequence files (GenBank, FASTA, SnapGene, SBOL) and accession IDs (NCBI, iGEM) to a common format

6.1KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.2 (the latest release), from the OSV.dev database.

ncbi-sequence-retriever

v1.1.2 · 5 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A light weighted tool to retrieve protein or nucleotide sequences based on list of ACCESSION ids from NCBI protein and nuccore database

0Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.1.2 (the latest release), from the OSV.dev database.

@bioscript/seq-translate

v0.2.3 · 1 day ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Efficient sequence translation utilities supporting all NCBI genetic code tables.

484Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.3 (the latest release), from the OSV.dev database.

ncbi-mcp

v2.1.0 · 10 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Model Context Protocol (MCP) server that integrates NCBI Entrez capabilities.

8Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.1.0 (the latest release), from the OSV.dev database.

jbrowse-plugin-linkout

v0.2.2 · 3 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI linkout

15Downloads across all versions in the last 7 days, from the official npm downloads API.Apache License 2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.2 (the latest release), from the OSV.dev database.

@ncbijs/structure

v0.1.1 · 3 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Typed client for NCBI Structure (MMDB/PDB) macromolecular 3D structures

1Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

@ncbijs/http-mcp

v0.1.1 · 3 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

MCP server exposing NCBI biomedical tools for LLM agents

16Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

ncbi-eutils

v0.3.0 · 9 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI E-utilities API for JavaScript (Node + Browser)

4Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.3.0 (the latest release), from the OSV.dev database.

ncbi-design-system

v2.2.0 · 3 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI Design System

1Downloads across all versions in the last 7 days, from the official npm downloads API.ISCLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.2.0 (the latest release), from the OSV.dev database.

@pipeworx/mcp-ncbi-eutils

v0.1.0 · 2 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI E-utilities — federated Entrez search/fetch (PubMed/Gene/Nucleotide/…)

15Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.0 (the latest release), from the OSV.dev database.

@ncbijs/protein

v0.1.1 · 3 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Typed client for NCBI Protein database (EFetch) with FASTA and GenBank format support

1Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

ncbi-eutil-server

v0.0.4 · 12 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

ncbi-eutils-server with Node

5Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v0.0.4 (the latest release), from the OSV.dev database.

blast-ncbi-tools

v0.10.101 · 7 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI blast+ wrapper for JBlast

5Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.10.101 (the latest release), from the OSV.dev database.

taxlookup

v2.7.0 · 7 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Tax Lookup > NCBI Taxonomy tools

0Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.7.0 (the latest release), from the OSV.dev database.

pi-pubmed

v1.0.1 · 3 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Search PubMed and fetch article abstracts directly from Pi using NCBI E-utilities

19Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.1 (the latest release), from the OSV.dev database.

@metaharness/example-bio

v0.2.0 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

MetaHarness example — bioinformatics harness with gene lookup, PubMed literature retrieval, and genomic sequence fetch via NCBI E-utilities and Ensembl REST (npx @metaharness/example-bio my-bot)

19Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.0 (the latest release), from the OSV.dev database.

@lsbjordao/genbank-js

v1.0.2 · 3 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

NCBI GenBank / E-utilities client for Node.js

8Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.2 (the latest release), from the OSV.dev database.
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