This parses emf format from Ensembl alignments

Look up genes, fetch sequences, predict variant consequences, find orthologs and cross-database xrefs via Ensembl REST via MCP. STDIO or Streamable HTTP.

Minimal genome browser based on TnT Board and Ensembl data

Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation

CLI for Ensembl VEP and Variant Recoder

rest api for ensembl

Model Context Protocol server for Ensembl genomics database

Implementation of a VSM-dictionary that uses the EBI search RESTful Web Services to interact with the Ensembl genome database

Model Context Protocol server for Ensembl genomics database

Library to retrieve data via the Ensembl REST Api

Implementation of a VSM-dictionary that uses the EBI search RESTful Web Services to interact with the Ensembl Genomes database (non-vertebrate species)

MyGene.info — gene annotation joining NCBI/Ensembl/UniProt/KEGG/OMIM

Transcript Viewer based on TnT board and Ensembl data

MetaHarness example — bioinformatics harness with gene lookup, PubMed literature retrieval, and genomic sequence fetch via NCBI E-utilities and Ensembl REST (npx @metaharness/example-bio my-bot)

A client for the Ensembl REST API using the axios requests library.

Unofficial Node API client for Ensembl's REST API

npm package for ensemble bacteria REST API

Open Targets MCP — disease/target/drug knowledge graph.

Gene orthologs for HiGlass

Command-line tools for [react-msaview](../) (JBrowseMSA), including batch InterProScan processing for multiple sequence alignments.