126 packages matching “JBrowse”

jbrowse-plugin-msaview

v3.10.0 · 5 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A multiple sequence alignment and phylogenetic tree viewer for JBrowse 2, linked column by column to the genome. It packages [react-msaview](https://github.com/GMOD/react-msaview), whose [user guide](https://github.com/GMOD/react-msaview/blob/main/docs/us

530Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v3.10.0 (the latest release), from the OSV.dev database.

jbrowse-plugin-gdc

v2.3.4 · 5 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 GDC plugin

28Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.3.4 (the latest release), from the OSV.dev database.

jbrowse-plugin-ideogram

v2.0.0 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 ideogram plugin

16Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.0.0 (the latest release), from the OSV.dev database.

@jbrowse/render-core

v4.3.0 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

GPU/Canvas2D rendering primitives for JBrowse displays: the HAL, the draw-lifecycle mixin, per-region/global backend bases, and the React backend hooks

886Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.3.0 (the latest release), from the OSV.dev database.

jbrowse-plugin-mafviewer

v1.6.1 · 3 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A viewer for multiple alignment format (MAF) files in JBrowse 2

17Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.6.1 (the latest release), from the OSV.dev database.

jbrowse-plugin-ucsc

v1.0.3 · 5 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 UCSC API plugin

15Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.3 (the latest release), from the OSV.dev database.

@jbrowse/shader-tools

v4.3.0 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Slang → WGSL/GLSL + typed-TS shader codegen for JBrowse GPU displays (the `pnpm gen:shaders` pipeline)

142Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.3.0 (the latest release), from the OSV.dev database.

jbrowse-plugin-biothings

v1.1.1 · 3 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 biothings API plugin

17Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.1.1 (the latest release), from the OSV.dev database.

jbrowse-plugin-tview

v2.2.3 · 25 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Loads BAM/CRAM read pileups into [react-msaview](https://github.com/GMOD/react-msaview) for a `samtools tview` style interface inside JBrowse 2.

13Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.2.3 (the latest release), from the OSV.dev database.

jbrowse-plugin-civic

v1.0.8 · 3 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 CIVIC API plugin

7Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.8 (the latest release), from the OSV.dev database.

@jbrowse/plugin-marks

v5.0.0-beta.7 · 19 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 config-authored mark display: bars, points and spans drawn from a declared encoding over any feature track

172Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v5.0.0-beta.7 (the latest release), from the OSV.dev database.

@gmod/jbrowse-cli

v0.0.1-beta.23 · 6 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A command line tool for working with JBrowse 2

5Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.0.1-beta.23 (the latest release), from the OSV.dev database.

@jbrowse/display-kit

v4.3.0 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

The display integration layer a track type is built on: the fetch foundations, the byte gate, the display chrome, SVG export, and the RegionHost view contract

615Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.3.0 (the latest release), from the OSV.dev database.

@jbrowse/add-track-core

v4.1.14 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

The file-format table the add-track guessers and the CLI both read — no framework deps

860Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.1.14 (the latest release), from the OSV.dev database.

@jbrowse/bandage-core

v4.0.28 · 2 hours ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Pangenome graph layout and drawing with no host: GFA in, the Bandage force-directed engine and reference-anchored layouts, a Canvas2D renderer, hit testing and labels out

3.3KDownloads across all versions in the last 7 days, from the official npm downloads API.GPL-3.0-or-laterLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.0.28 (the latest release), from the OSV.dev database.

jbrowse-plugin-multilevel-linear-view2

v1.0.2 · 1 year ago

95
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse plugin for the multilevel linear view

10Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.2 (the latest release), from the OSV.dev database.

@overture-stack/dms-jbrowse-components

v0.1.0-beta.4 · 3 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Jbrowse components for DMS

1Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v0.1.0-beta.4 (the latest release), from the OSV.dev database.

jbrowse-plugin-reactome

v1.0.1 · 4 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

> JBrowse 2 plugin for Reactome ([Reactome](https://reactome.org/))

11Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.1 (the latest release), from the OSV.dev database.

jbrowse2-plugin-nuccontent

v1.1.6 · 4 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 statistics sequence adapter

12Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.1.6 (the latest release), from the OSV.dev database.

@jbrowse/synteny-core

v4.1.14 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Shared utilities for synteny and dotplot rendering

441Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.1.14 (the latest release), from the OSV.dev database.
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