140 packages matching “fastA”

@ncbijs/protein

v0.1.1 · 3 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Typed client for NCBI Protein database (EFetch) with FASTA and GenBank format support

2Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

ntseq

v1.1.0 · 9 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Nucleotide sequence manipulation and analysis library

2.7KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.1.0 (the latest release), from the OSV.dev database.

fastaspeciesfilter

v0.2.0 · 5 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

This tool allows the selection of a taxonomy ID and filters all sequences from a FASTA file that belong to clades subordinate to the selected ID.

4Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.0 (the latest release), from the OSV.dev database.

@glysade/bio-parsers

v4.1.8 · 2 years ago

90
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A library of parsers for interconverting between genbank, fasta, and (eventually) sbol through Teselagen's intermediary json format

4Downloads across all versions in the last 7 days, from the official npm downloads API.ISCLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.1.8 (the latest release), from the OSV.dev database.

@teselagen/bio-parsers

v0.4.38 · 4 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

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3.2KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.4.38 (the latest release), from the OSV.dev database.

logosj-webapp

v1.3.6 · 6 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

This repository contains the LogosJ webapp, a small React-based web application for creating sequence logos from PWMs, FASTA sequences, or motifs in common formats including MEME, JASPAR, and TRANSFAC. You can either edit PWMs or FASTA sequences and watch

1Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.3.6 (the latest release), from the OSV.dev database.

@fishka/seqio

v0.10.0 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Sequencing file parsers and writers for bioinformatics data

1.6KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.10.0 (the latest release), from the OSV.dev database.

@apollo-annotation/cli

v1.1.1 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Command line interface for the Apollo annotation server

49Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v1.1.1 (the latest release), from the OSV.dev database.

@jbrowse/img

v4.3.0 · 3 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Static exports of JBrowse 2 rendering.

36Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.3.0 (the latest release), from the OSV.dev database.

sboljs

v3.0.2 · 4 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js.

36Downloads across all versions in the last 7 days, from the official npm downloads API.BSD-2-ClauseLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v3.0.2 (the latest release), from the OSV.dev database.

@platforma-open/milaboratories.redefine-clonotypes.assembling-fasta

v1.1.2 · 10 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

No description provided.

171Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v1.1.2 (the latest release), from the OSV.dev database.

@datagrok/bio

v2.28.3 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Bioinformatics support (import/export of sequences, conversion, visualization, analysis). [See more](https://github.com/datagrok-ai/public/blob/master/packages/Bio/README.md) for details.

510Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v2.28.3 (the latest release), from the OSV.dev database.

@bioscript/seq-format

v0.2.3 · 17 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Bioinformatics file format converters and parsers (GenBank, EMBL, GFF/GTF, BED, VCF, SAM text)

48Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.3 (the latest release), from the OSV.dev database.

@gmod/gff

v2.1.0 · 5 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

read and write GFF3 data as streams

19.6KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.1.0 (the latest release), from the OSV.dev database.

@gmod/bgzf-filehandle

v6.6.0 · 9 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

read from a compressed bgzip file (with .gzi) as if it were uncompressed

13.0KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v6.6.0 (the latest release), from the OSV.dev database.

msa-parsers

v6.0.0 · 3 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A TypeScript library for parsing multiple sequence alignment (MSA) files and related formats.

422Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v6.0.0 (the latest release), from the OSV.dev database.

react-msaview-cli

v6.0.0 · 3 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Command-line tools for [react-msaview](../) (JBrowseMSA), including batch InterProScan processing for multiple sequence alignments.

347Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v6.0.0 (the latest release), from the OSV.dev database.

ncbi-database-skill

v1.0.6 · 5 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Comprehensive NCBI Database CLI tool for querying E-utilities API - Gene, PubMed, ClinVar, SRA, BLAST, and more

79Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.6 (the latest release), from the OSV.dev database.

protein-copilot-mcp

v0.1.4 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

ProteinCopilot — AI-driven proteomics mass spectrometry search MCP server

21Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.4 (the latest release), from the OSV.dev database.

@gmod/jbrowse-cli

v0.0.1-beta.23 · 5 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A command line tool for working with JBrowse 2

26Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.0.1-beta.23 (the latest release), from the OSV.dev database.
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