265 packages matching “Bioinformatics”

opencode-bioinformatics

v0.1.0 · 5 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

CLI-based Bioinformatics Coding Agents - OpenCode plugin for bioinformatics workflows

5Downloads across all versions in the last 7 days, from the official npm downloads API.BUSL-1.1License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.0 (the latest release), from the OSV.dev database.

bioinformatics-hub

v1.4.1 · 5 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

an open source bioinformatics package for retrieving, processing and analyzing the sequences and structures of biomolecules, such as proteins and nucleotides.

11Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.4.1 (the latest release), from the OSV.dev database.

@bgicli/bgicli

v2.8.8 · 5 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

BGI CLI — Bioinformatics AI terminal for Chinese researchers (百炼/DeepSeek/Kimi/Qwen)

161Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.8.8 (the latest release), from the OSV.dev database.

npg_ranger

v2.0.0 · 8 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Streaming service for bioinformatics data.

22Downloads across all versions in the last 7 days, from the official npm downloads API.SEE LICENSE IN LICENSELicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.0.0 (the latest release), from the OSV.dev database.

core-bio

v0.0.7 · 9 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

biowonks bioinformatics tools

9Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.0.7 (the latest release), from the OSV.dev database.

@omicverse/dsh-omicos

v0.2.1 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

OmicOS as a deepseek-harness (dsh) plugin — Mode A: omicos bioinformatics tools + background jobs + login commands for the dsh agent (DSH-PLUGIN.md).

124Downloads across all versions in the last 7 days, from the official npm downloads API.GPL-3.0-onlyLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.1 (the latest release), from the OSV.dev database.

cytoscape

v3.34.3 · 16 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Graph theory (a.k.a. network) library for analysis and visualisation

12.1MDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v3.34.3 (the latest release), from the OSV.dev database.

dsh-science

v0.2.0 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Claude Science-style research workbench for DeepSeek Harness: ReAct research-loop engine (research_* tools), versioned artifacts with provenance (artifact_* tools), SSH remote-compute engine for long bioinformatics jobs on workstations/HPC (remote_* tools

201Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.2.0 (the latest release), from the OSV.dev database.

node-red-contrib-biotools

v0.0.43 · 4 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

bioinformatics package for node-red (input / output)

2Downloads across all versions in the last 7 days, from the official npm downloads API.GNULicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.0.43 (the latest release), from the OSV.dev database.

geni-bioinfo

v0.1.39 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

CLI for GENI — a control plane for running Nextflow bioinformatics pipelines on AWS

68Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.39 (the latest release), from the OSV.dev database.

@citation/csl-style-bioinformatics

v1.0.0 · 2 years ago

90
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

CSL style for Bioinformatics

0Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.0 (the latest release), from the OSV.dev database.

@galaxyproject/loom

v0.7.0 · 6 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

AI co-scientist for Galaxy bioinformatics, built on Pi.dev

20Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.7.0 (the latest release), from the OSV.dev database.

bionode

v4.0.1 · 9 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A Node.js JavaScript library for client and server side bioinformatics

13Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.0.1 (the latest release), from the OSV.dev database.

@biocontext7/mcp

v1.0.0 · 5 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

TypeScript MCP server for biocontext7 — bioinformatics tool discovery and documentation

3Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.0 (the latest release), from the OSV.dev database.

bioinformatics

v0.0.1 · 10 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

[![Build Status](https://travis-ci.org/jimmcgaw/bioinformatics.svg?branch=master)](https://travis-ci.org/jimmcgaw/bioinformatics)

3Downloads across all versions in the last 7 days, from the official npm downloads API.ISCLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.0.1 (the latest release), from the OSV.dev database.

hemagent-max

v1.5.10 · 5 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Lean bioinformatics AI agent plugin for OpenCode — 46% fewer tokens than hemagent

21Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v1.5.10 (the latest release), from the OSV.dev database.

@pyintel/arc-module-science-bioinformatics

v1.0.2 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Bioinformatics & Biological Database Search (PubChem, PubMed, UniProt, AlphaFold, PDB) Module for Apex Arc

3Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v1.0.2 (the latest release), from the OSV.dev database.

@iflow-mcp/bioinformatics-mcp-server

v2.1.1 · 10 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

MCP server for intelligent Python script execution in bioinformatics workflows

1Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.1.1 (the latest release), from the OSV.dev database.

bioinformatics-js

v1.3.2 · 12 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A comprehensive React library for bioinformatics visualization tools including DNA sequence viewers, annotation management, and more.

0Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.3.2 (the latest release), from the OSV.dev database.

borderline-ui

v0.1.6 · 9 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Storyline-based interface for translation bioinformatics

3Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.6 (the latest release), from the OSV.dev database.
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