313 packages matching “ucsc-genome”

@pipeworx/mcp-ucsc-genome

v0.1.1 · 2 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

UCSC Genome Browser REST API — reference genome assemblies for ~250 species, the annotation tracks on each (genes, variants, conservation, regulation), the rows of any track over a region, and raw DNA sequence. Keyless.

62Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.1 (the latest release), from the OSV.dev database.

@gmod/ucsc-hub

v2.0.13 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Read and write UCSC track and assembly hub files in node or the browser

7.7KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.0.13 (the latest release), from the OSV.dev database.

jbrowse-plugin-msaview

v3.10.0 · 3 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A multiple sequence alignment and phylogenetic tree viewer for JBrowse 2, linked column by column to the genome. It packages [react-msaview](https://github.com/GMOD/react-msaview), whose [user guide](https://github.com/GMOD/react-msaview/blob/main/docs/us

530Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v3.10.0 (the latest release), from the OSV.dev database.

human-genome

v1.3.0 · 5 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

This library contains convenient functions to work with genome coordinates. It exports one global assembly for each version. Currently the following versions are supported:

256Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.3.0 (the latest release), from the OSV.dev database.

@jbrowse/react-linear-genome-view2

v4.3.0 · 4 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 linear genome view React component

4.8KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.3.0 (the latest release), from the OSV.dev database.

ucsc-xena-client

v2.99.3 · 1 year ago

95
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

UCSC Xena Client. Functional genomics visualizations.

310Downloads across all versions in the last 7 days, from the official npm downloads API.

No known vulnerabilities

Known vulnerabilities affecting v2.99.3 (the latest release), from the OSV.dev database.

jbrowse-plugin-ucsc

v1.0.3 · 5 years ago

85
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 UCSC API plugin

15Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.3 (the latest release), from the OSV.dev database.

g2p_mapper

v2.1.7 · 1 month ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Map genome to protein coordinates and back

4.9KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.1.7 (the latest release), from the OSV.dev database.

@genome-spy/core

v0.89.0 · 3 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

GenomeSpy, a visualization grammar and a GPU-accelerated rendering engine for genomic (and other) data

311Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.89.0 (the latest release), from the OSV.dev database.

@jbrowse/capture

v4.3.0 · 29 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Drive a JBrowse 2 instance with Puppeteer and screenshot it once it has actually finished rendering

168Downloads across all versions in the last 7 days, from the official npm downloads API.Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.3.0 (the latest release), from the OSV.dev database.

wickra-genome-wasm

v0.1.5 · 1 day ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

WebAssembly bindings for wickra-genome — the market vector database in the browser.

351Downloads across all versions in the last 7 days, from the official npm downloads API.MIT OR Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.5 (the latest release), from the OSV.dev database.

@ucsantacruz/truss

v0.8.3 · 1 year ago

95
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Truss Design System

61Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.8.3 (the latest release), from the OSV.dev database.

wickra-genome

v0.1.5 · 1 day ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

A vector database of the market: every asset a live vector over the streaming indicators, with similarity, clustering and anomaly detection. Node.js bindings powered by Rust.

358Downloads across all versions in the last 7 days, from the official npm downloads API.MIT OR Apache-2.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.1.5 (the latest release), from the OSV.dev database.

kromosynth-cli

v1.0.17 · 11 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Command-line interface to neuro-evolution of pattern producing networks and audio signal paths for audio waveform breeding with quality diversity search.

543Downloads across all versions in the last 7 days, from the official npm downloads API.AGPL-3.0-or-laterLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.0.17 (the latest release), from the OSV.dev database.

@jbrowse/react-circular-genome-view2

v4.3.0 · 4 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

JBrowse 2 circular genome view React component

268Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v4.3.0 (the latest release), from the OSV.dev database.

higlass

v2.3.5 · 3 months ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

HiGlass Hi-C / genomic / large data viewer

10.8KDownloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.3.5 (the latest release), from the OSV.dev database.

@weng-lab/create-genomebrowser

v2.0.0 · 10 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Create an editable genome browser application.

185Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v2.0.0 (the latest release), from the OSV.dev database.

ideogram

v1.53.0 · 1 year ago

95
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Chromosome visualization for the web

4.9KDownloads across all versions in the last 7 days, from the official npm downloads API.CC0-1.0License declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v1.53.0 (the latest release), from the OSV.dev database.

@genome-spy/app

v0.89.0 · 3 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

GenomeSpy-based visualization tool for analyzing multiple biological samples.

229Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.89.0 (the latest release), from the OSV.dev database.

@cognivia/core

v0.3.0 · 29 days ago

100
0-100 score computed by this site from verifiable signals only: known OSV.dev advisories affecting this exact version, how recently it was published, and the repository's OpenSSF Scorecard.

Cognivia's Learning Genome + Session Report engine. The single diagnostics algorithm shared by the site, developer console, CLI, and MCP server.

17Downloads across all versions in the last 7 days, from the official npm downloads API.MITLicense declared in the package manifest.

No known vulnerabilities

Known vulnerabilities affecting v0.3.0 (the latest release), from the OSV.dev database.
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