Single cell RNA-seq analysis in Javascript

Fetch remote single-cell RNA-seq datasets for input into the bakana analysis pipeline.

BioMate MCP server — exposes 19 scientific workflow tools (RNA-seq, ADMET, WGS, CryoEM, proteomics, drug discovery) to any MCP-compatible AI host via stdio.

A simple tool to keep requests to be executed in order.

A framework for esbuild plugins with transform and emit capabilities.

RNA-Seq Plots is a collection of React.js components designed to visualise RNA sequencing data. The package includes a Volcano Plot and a Principal Component Analysis (PCA) plot, both of which are powered by Highcharts.

Immutable Data Collections

A commonjs to esm converter for esbuild.

Sends structured log events to the Seq HTTP ingestion API

Parse sequence files (GenBank, FASTA, SnapGene, SBOL) and accession IDs (NCBI, iGEM) to a common format

Lazy sequences

A Winston v3 transport for Seq

A file loader plugin for esbuild for `require.resolve` statements.

A logging helper for the RNA cli.

Core sequence manipulation utilities for DNA/RNA operations: conversion, complement, reverse complement, k-mer analysis, minimizers, and De Bruijn graphs.

A file loader plugin for esbuild for constructed URLs using import metadata.

Load and setup RNA configuration object.

A loader plugin for esbuild for files with unknown loader.

Chainable asynchronous flow control with sequential and parallel primitives and pipeline-style error handling

A Bunyan stream that sends log events to Seq